Assembly of DNA triangles mediated by perylene bisimide caps

Perylene bisimides (PBI) have been synthetically incorporated as caps onto a Y-shaped DNA triple strand. These PBI caps serve as "sticky" ends in the spontaneous assembly of larger DNA ensembles, linking the triangular DNA through stacking interactions. This, in turn, yields a hypsochromic shift in the absorption and a red shift in the fluorescence as characteristic optical readouts. This assembly occurs spontaneously without any enzymatic ligation process and without the use of overhanging DNA as sticky ends. Instead, dimerizations of the PBI chromophores in the assembly are controlled by the DNA as a structural scaffold. Thereby, the PBI-driven assembly is fully reversible. Due to the fact that PBI dimerization does not occur in the single strand, the aggregates can be destroyed by thermal dehybridization of the DNA scaffold and reassembled by reannealing of the DNA construct. In view of the fact that PBI forms stable radical anions, the presented DNA architectures are not only interesting optical biomaterials, but are also promising materials for molecular electronics with DNA.     

Effect of pH on thermal- and chemical-induced denaturation of GFP

Green fluorescent protein (GFP) is an unusually stable autofluorescent protein that is increasingly being exploited for many applications. In this report, we have used fluorescence spectroscopy to study the effect of pH on the denaturation of GFP with sodium dodecyl sulfate (SDS), urea, and heat. Surprisingly, SDS (up to 0.5%) did not have any significant effect on the fluorescence of GFP at pH 7.5 or 8.5 buffers; however, at pH 6.5, the protein lost all fluorescence within 1 min of incubation. Similarly, incubation of GFP with 8 M urea at 50°C resulted in time dependent denaturation of GFP, but only in pH 6.5 buffer. At higher pH values (pH 7.5 and pH 8.5), the GFP was quite stable in 8 M urea at 50°C, showing only a slight decrease in fluorescence. Heat denaturation of GFP was found to be pH dependent as well, with the denaturation being fastest at pH 6.5 as compared to pH 7.5 or pH 8.5. Like the denaturation studies, renaturation of heat-denatured GFP was most efficient at pH 8.5, followed by pH 7.5, and then pH 6.5. These results suggests that GFP undergoes a structural/stability shift between pH 6.5 and pH 7.5, with the GFP structure at pH 6.5 being very sensitive to denaturation by SDS, urea, and heat.     

An All‐Photonic Molecular Keypad Lock

Off and on : A molecular triad, consisting of a porphyrin linked to two different, independently addressable photochromic moieties, functions as a molecular keypad lock with all‐photonic inputs and output. The porphyrin correlates the responses of the two inputs to light of different wavelengths and provides an appropriate output as fluorescence, which results only when one of eight possible input combinations has been applied (see figure).

     

Negatively Charged Yellow‐Emitting 1‐Aminopyrene Dyes for Reductive Amination and Fluorescence Detection of Glycans

1‐Aminopyrenes with three ω‐hydroxylated N‐alkylsulfonamido or alkylsulfonyl residues in positions 3, 6, and 8 were prepared, O‐phosphorylated, and applied for reductive amination of oligosaccharides. The dyes (?≈20 000 m ^?1 cm^?1) with six negative charges (pH≥8) and low m/z ratios enable labeling and fluorescence detection of reducing sugars (glycans) related to the most structurally and functionally diverse class of natural products. Under excitation with a 488 nm laser, the new glycoconjugates emit yellow light of about 560 nm, outperforming (with respect to brightness and faster electrophoretic mobilities) the corresponding APTS derivatives (benchmark dye with green emission in conjugates).     

Synthesis and Photophysical Properties of Dimethoxybis(3,3,3‐trifluoropropen‐1‐yl)benzenes: Compact Chromophores Exhibiting Violet Fluorescence in the Solid State

Dimethoxybis(3,3,3‐trifluo‐ropropen‐1‐yl)benzenes were prepared through palladium‐catalyzed double cross‐coupling reactions of diiododimethoxybenzenes with CF₃C≡CZnCl, followed by reduction of CF₃C≡C groups with LiAlH₄ or H₂ in the presence of the Lindlar catalyst. The edges of the absorption spectra of 1,2‐(MeO)₂‐4,5‐(CF₃CHC=CH)₂benzenes 1 and 1,3‐(MeO)₂‐4,6‐(CF₃CH=CH)₂benzenes 2 in cyclohexane ranged from 348 to 360 nm, whereas the absorption spectra of 1,4‐(MeO)₂‐2,5‐[(E)‐CF₃CH=CH]₂ benzene ((E)‐ 3 ) ended at 406 nm. These findings indicate that the effective conjugation length of (E)‐ 3 was significantly larger than those of 1 and 2 . Consistently, 1 and 2 in cyclohexane exhibited fluorescence with emission maxima in the UV region, whereas (E)‐ 3 in cyclohexane emitted violet light with an emission maximum at 407 nm. All the fluorescence spectra of 1 – 3 in various solvents redshifted as the solvent polarity increased. The photoluminescence of 1 , E‐1 , Z‐1 , 2 , E‐2 , E‐2H , Z‐2 , E‐3 , E‐3H , Z‐3 in the solid states was also observed with emission maxima in the violet region. It is important to note that the quantum yields of (E)‐ 3 in a neat thin film and in a doped polymer film were 0.37 and 0.49, respectively. Density functional theory calculations suggested that the fluorine atoms contribute to a slight extension of both the HOMOs and the LUMOs, as well as narrowing of the HOMO–LUMO gaps when compared with the corresponding fluorine‐free analogues. In the case of (E)‐ 3 , it is suggested that the HOMO–LUMO transition includes charge transfer from the ethereal oxygen atoms to the C(sp²) CF₃ moieties.     

可用于电光材料的新型非线性光学活性的玻璃分子

通过在枝化苯胺-吡咯啉发色团接入具有π-π作用的葸官能团,设计并合成了一种可用于二阶非线性光学材料的新型树枝状玻璃分子发色团ETO和ETF.所得到的分子玻璃发色团具有良好的自成膜性能,其玻璃化温度测得分别为41℃(ETO)和39℃(ETF),用SHG法测得薄膜的非线性电光系数(d33)分别为38,32 pm/V.结果表...     

The intramolecular charge transfer in a donor–π–acceptor dianion probed by resonance Raman spectroscopy and quantum chemical calculations

The dideprotonation of 4‐(4‐nitrophenylazo)resorcinol generates an anionic species with substantial electronic π delocalization. As compared to the parent neutral species, the anionic first excited electronic transition, characterized as an intramolecular charge transfer (ICT) from the CO⁻ groups to the NO₂ moiety, shows a drastic red shift of ca. 200 nm in the λ_max in the UV‐vis spectrum, leading to one of the lowest ICT energies observed (λ_max = 630 nm in dimethyl sulfoxide (DMSO)) in this class of push‐pull molecular systems. Concomitantly, a threefold increase in the molar absorptivity (ε_max) in comparison to the neutral species is observed. The resonance Raman enhancement profiles reveal that in the neutral species the chromophore involves several modes, as ν(C N), ν(NN), ν(CC) and ν_s(NO₂), whereas in the dianion, there is a selective enhancement of the NO₂ vibrational modes. The quantum chemical calculations of the electronic transitions and vibrational wavenumbers led to a consistent analysis of the enhancement patterns observed in the resonance Raman spectra. Copyright © 2009 John Wiley & Sons, Ltd.     

Near‐Infrared Quadrupolar Chromophores Combining Three‐Coordinate Boron‐Based Superdonor and Superacceptor Units

Herein, two new quadrupolar acceptor‐π‐donor‐π‐acceptor (A‐π‐D‐π‐A) chromophores have been prepared featuring a strongly electron‐donating diborene core and strongly electron‐accepting dimesitylboryl (BMes₂) and bis(2,4,6‐tris(trifluoromethyl)phenyl)boryl (B^FMes₂) end groups. Analysis of the compounds by NMR spectroscopy, X‐ray crystallography, cyclic voltammetry, and UV/Vis‐NIR absorption and emission spectroscopy indicated that the compounds have extended conjugated π‐systems spanning their B₄C₈ cores. The combination of exceptionally potent π‐donor (diborene) and π‐acceptor (diarylboryl) groups, both based on trigonal boron, leads to very small HOMO–LUMO gaps, resulting in strong absorption in the near‐IR region with maxima in THF at 840 and 1092 nm and very high extinction coefficients of ca. 120 000 m ^?1 cm^?1. Both molecules also display weak near‐IR fluorescence with small Stokes shifts.     

Influence of Alkyl Chains of Modified Polysuccinimide‐Based Polycationic Polymers on Polyplex Formation and Transfection

The development of polymers with low toxicity and efficient gene delivery remains a significant barrier of nonviral gene therapy. Modification and tuning of chemical structures of carriers is an attractive strategy for efficient nucleic acid delivery. Here, polyplexes consisting of plasmid DNA (pDNA) and dodecylated or non‐dodecylated polysuccinimide (PSI)‐based polycations are designed, and their transfection ability into HeLa cells is investigated by green fluorescent protein (GFP) expressing cells quantification. All cationic polymers show lower cytotoxicity than those of branched polyethyleneimine (bPEI). PSI and bPEI‐based polyplexes have comparable physicochemical properties such as size and charge. Interestingly, a strong interaction between dodecylated polycations and pDNA caused by the hydrophobic moiety is observed in dodecylated PSI derivatives. Moreover, the decrease of GFP expression is associated with lower dissociation of pDNA from polyplexes according to the heparin displacement assay. Besides, a hydrophobization of PSI cationic derivatives with dodecyl side chains can modulate the integrity of polyplexes by hydrophobic interactions, increasing the binding between the polymer and the DNA. These results provide useful information for designing polyplexes with lower toxicity and greater stability and transfection performance.